Population genomics

These are the exercises for a course on how to do basic population genomic analyses:

Part 0: here you can brush up on your linux command line knowledge, or get started learning about the command line. A basic understanding and proficiency is required for the rest of this exercise.

Part 1: here you can learn about quality control of your samples, read mapping and variant calling.

Part 2: here you will learn more about the data, the metadata and basic vcf manipulations.